The figure below illustrates the hierarchy for MiMeMo scripts. Scripts are loosely classified into families - bathymetry - fish - flows - NM - Sediment - StrathE2E. These can all be run from a master script. The network is created programmaticaly by looking for objects across all scripts present in both a saveRDS and readRDS call. The blue end of a connection is where the object is created, the red end of a connection is a script using that object. You can see a broad structure where the script creating the domain polygon contributes to most other scripts (lots of blue), which then all feed into the strathe2e compiling scripts (lots of red).